How to migrate windows to Linux CE


I have been running windows CE version for a while and I now want to migrate to linux version for various reasons.
Original windows version is 5.1.3, on IIS/sqlite.
I have successfully set up a fresh Ubuntu deployment (6.1.1) using the standard install script (NGinx/mariadb).

However, I would like to know how to go about migrating the users and data without losing anything.
A tutorial would be great for this!

Any help greatly appreciated.

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Wow how did I miss that…?